| COM. | ARGUMENTS | APPL. TO | DESCRIPTION |
| ADD | the same as for SEL | structure | Add to selection |
| ATO | 0, 1, 2, 3, 4, 5, 6, 7, BAL, BIG, SPA | selection | Drawing style for atoms |
| BAC | 0, 1, 2, 3, 4, 5, OFF | selection | Draw backbone |
| BG | color_specification | main window | Change background color |
| BON | 0, 1, 2, 3, 4, 5 | selection | Drawing style for bonds |
| CAT | structure_identifier | structure | Catch structure |
| CEN | none |
structure,
selection |
Redefine internal
system origin |
| COL |
detailed_color_specification,
RED, GREEN, BLUE, YELLOW, CYAN, MAGENTA, WHITE, YELLOW-GREEN, CYAN-GREEN, CYAN-BLUE, MAGENTA-BLUE, MAGENTA-RED, ORANGE, HOT, COLD, MONOCHROME, CPK, ZEBRA, CHAIN, HYPHOB |
selection |
Assign color;
do not abbreviate color scheme name! |
| DIS |
structure_identifier
*, all |
structure | Discard structure |
| EXE | file_name | script file | Execute script |
| EXI | none | garlic session | Quit garlic session |
| FAD |
FRO shift, BAC shift, OFF, PLA,
SPH, CYL, HALF-SPH, HALF-CYL |
structure | Change color fading |
| FG | color_specification | main window | Change text color |
| FON | font_name | all windows | Change font |
| HID | none | selection | Hide atoms and bonds |
| HYB | none, OFF | structure | Generate hydrogen bonds |
| LAB | none, OFF | selection | Show labels |
| LOA | file_name | structure_file | Load structure (file) |
| LOG | file_name, OFF | commands | Log garlic commands |
| MON | none | main window | Switch to mono mode |
| PAU | none | garlic script | Pause script execution |
| POS | x, y, z | structure | Move to (x, y, z) |
| REG | none | Register garlic | |
| RES | the same as for SEL | selection | Restrict selection |
| ROT | axis angle | structure | Rotate |
| SAV |
file_name
file_name SEL |
structure or
selection |
Save atomic data to file
(SEL = selection only) |
| SEL |
chains/res_nums/res_names/atom_names
residue_numbers residue_names *, all, aci, bas, cha, com, het, pho, mai, neg, pol, pos, sid, sma, tin |
structure,
selection |
Define new selection
(overwrite previous) |
| SHO | none | selection | Show atoms and bonds |
| SLA |
FRO shift, BAC shift, OFF, PLA,
SPH, CYL, HALF-SPH, HALF-CYL |
structure | Change slab |
| STE | none, OFF | main window | Switch to stereo mode |
| TAG |
"string"
OFF |
structure | Assign or remove tag |
| TBG | color_specification |
input+output
window |
Change text
background color |
| TFG | color_specification |
input+output
window |
Change text color |
| TIT |
identifier x y "string"
identifier x y identifier OFF |
main window |
Add, move or
remove title |
| TRA | axis shift | structure | Translate |