AddOption(RefObjOpt *opt) | ObjCryst::RefinableObj | [protected] |
AddPar(const RefinablePar &newRefPar) | ObjCryst::RefinableObj | |
AddPar(RefinablePar *newRefPar) | ObjCryst::RefinableObj | |
AddPar(RefinableObj &newRefParList) | ObjCryst::RefinableObj | |
AddRestraint(Restraint *pNewRestraint) | ObjCryst::RefinableObj | |
AddSubRefObj(RefinableObj &) | ObjCryst::RefinableObj | [protected] |
BeginGlobalOptRandomMove() | ObjCryst::RefinableObj | |
BeginOptimization(const bool allowApproximations=false, const bool enableRestraints=false) | ObjCryst::RefinableObj | [virtual] |
ClearParamSet(const unsigned long id) const | ObjCryst::RefinableObj | |
CreateCopy() const=0 | ObjCryst::Scatterer | [pure virtual] |
CreateParamSet(const string name="") const | ObjCryst::RefinableObj | |
DeRegisterClient(RefinableObj &) const | ObjCryst::RefinableObj | [virtual] |
EndOptimization() | ObjCryst::RefinableObj | [virtual] |
EraseAllParamSet() | ObjCryst::RefinableObj | |
FindPar(const string &name) const | ObjCryst::RefinableObj | [protected] |
FindPar(const REAL *) const | ObjCryst::RefinableObj | [protected] |
FindParamSet(unsigned long id) const | ObjCryst::RefinableObj | [protected] |
FixAllPar() | ObjCryst::RefinableObj | |
GetClassName() const | ObjCryst::Scatterer | [virtual] |
GetClockMaster() const | ObjCryst::RefinableObj | |
GetClockScattCompList() const | ObjCryst::Scatterer | [protected] |
GetClockScatterer() const | ObjCryst::Scatterer | |
GetClockScatterer() | ObjCryst::Scatterer | |
GetColour() const | ObjCryst::Scatterer | [virtual] |
GetColourRGB() const | ObjCryst::Scatterer | [virtual] |
GetComponentName(const int i) const=0 | ObjCryst::Scatterer | [pure virtual] |
GetCrystal() const | ObjCryst::Scatterer | |
GetCrystal() | ObjCryst::Scatterer | |
GetGeneGroup(const RefinableObj &obj, CrystVector_uint &groupIndex, unsigned int &firstGroup) const | ObjCryst::RefinableObj | [virtual] |
GetLogLikelihood() const | ObjCryst::RefinableObj | [virtual] |
GetLSQCalc(const unsigned int) const | ObjCryst::RefinableObj | [virtual] |
GetLSQDeriv(const unsigned int, RefinablePar &) | ObjCryst::RefinableObj | [virtual] |
GetLSQObs(const unsigned int) const | ObjCryst::RefinableObj | [virtual] |
GetLSQWeight(const unsigned int) const | ObjCryst::RefinableObj | [virtual] |
GetName() const | ObjCryst::RefinableObj | [virtual] |
GetNbComponent() const=0 | ObjCryst::Scatterer | [pure virtual] |
GetNbLSQFunction() const | ObjCryst::RefinableObj | [virtual] |
GetNbOption() const | ObjCryst::RefinableObj | |
GetNbPar() const | ObjCryst::RefinableObj | |
GetNbParNotFixed() const | ObjCryst::RefinableObj | |
GetOccupancy() const | ObjCryst::Scatterer | |
GetOption(const unsigned int i) | ObjCryst::RefinableObj | |
GetOption(const unsigned int i) const | ObjCryst::RefinableObj | |
GetPar(const long i) | ObjCryst::RefinableObj | |
GetPar(const long i) const | ObjCryst::RefinableObj | |
GetPar(const string &name) | ObjCryst::RefinableObj | |
GetPar(const string &name) const | ObjCryst::RefinableObj | |
GetPar(const REAL *) | ObjCryst::RefinableObj | |
GetPar(const REAL *) const | ObjCryst::RefinableObj | |
GetParamSet(const unsigned long setId) const | ObjCryst::RefinableObj | |
GetParamSet(const unsigned long setId) | ObjCryst::RefinableObj | |
GetParamSet_ParNotFixedHumanValue(const unsigned long setId, const long parNumber) const | ObjCryst::RefinableObj | |
GetParamSetName(const unsigned long setId) const | ObjCryst::RefinableObj | |
GetParNotFixed(const long i) | ObjCryst::RefinableObj | |
GetParNotFixed(const long i) const | ObjCryst::RefinableObj | |
GetRefParListClock() const | ObjCryst::RefinableObj | |
GetRestraintCost() const | ObjCryst::RefinableObj | [virtual] |
GetScatteringComponentList() const=0 | ObjCryst::Scatterer | [pure virtual] |
GetSubObjRegistry() | ObjCryst::RefinableObj | |
GetSubObjRegistry() const | ObjCryst::RefinableObj | |
GetX() const | ObjCryst::Scatterer | |
GetY() const | ObjCryst::Scatterer | |
GetZ() const | ObjCryst::Scatterer | |
GLInitDisplayList(const bool noSymmetrics=false, const REAL xMin=-.1, const REAL xMax=1.1, const REAL yMin=-.1, const REAL yMax=1.1, const REAL zMin=-.1, const REAL zMax=1.1, const bool displayEnantiomer=false, const bool displayNames=false) const=0 | ObjCryst::Scatterer | [pure virtual] |
GlobalOptRandomMove(const REAL mutationAmplitude, const RefParType *type=gpRefParTypeObjCryst) | ObjCryst::RefinableObj | [virtual] |
InitRefParList()=0 | ObjCryst::Scatterer | [protected, pure virtual] |
InitRGBColour() | ObjCryst::Scatterer | [protected, virtual] |
IsBeingRefined() const | ObjCryst::RefinableObj | |
mClientObjRegistry | ObjCryst::RefinableObj | [mutable, protected] |
mClockMaster | ObjCryst::RefinableObj | [protected] |
mClockScattCompList | ObjCryst::Scatterer | [mutable, protected] |
mClockScatterer | ObjCryst::Scatterer | [protected] |
mColourName | ObjCryst::Scatterer | [protected] |
mColourRGB | ObjCryst::Scatterer | [protected] |
mDeleteRefParInDestructor | ObjCryst::RefinableObj | [protected] |
mIsbeingRefined | ObjCryst::RefinableObj | [protected] |
mLSQDeriv | ObjCryst::RefinableObj | [mutable, protected] |
mName | ObjCryst::RefinableObj | [protected] |
mNbRefParNotFixed | ObjCryst::RefinableObj | [mutable, protected] |
mOccupancy | ObjCryst::Scatterer | [protected] |
mOptionRegistry | ObjCryst::RefinableObj | [protected] |
mpCryst | ObjCryst::Scatterer | [protected] |
mRandomMoveIsDone | ObjCryst::RefinableObj | [protected] |
mRefParListClock | ObjCryst::RefinableObj | [protected] |
mRefparNotFixedIndex | ObjCryst::RefinableObj | [mutable, protected] |
mSubObjRegistry | ObjCryst::RefinableObj | [protected] |
mvpRefPar | ObjCryst::RefinableObj | [protected] |
mvpRestraint | ObjCryst::RefinableObj | [protected] |
mvpSavedValuesSet | ObjCryst::RefinableObj | [mutable, protected] |
mXYZ | ObjCryst::Scatterer | [protected] |
operator string() const | ObjCryst::Scatterer | |
operator=(const RefinableObj &old) | ObjCryst::RefinableObj | |
POVRayDescription(ostream &os, const CrystalPOVRayOptions &options) const=0 | ObjCryst::Scatterer | [pure virtual] |
Prepare() | ObjCryst::RefinableObj | [protected, virtual] |
PrepareForRefinement() const | ObjCryst::RefinableObj | |
Print() const=0 | ObjCryst::Scatterer | [pure virtual] |
RandomizeConfiguration() | ObjCryst::RefinableObj | [virtual] |
RefinableObj() | ObjCryst::RefinableObj | |
RefinableObj(const bool internalUseOnly) | ObjCryst::RefinableObj | |
RefinableObj(const RefinableObj &old) | ObjCryst::RefinableObj | |
RegisterClient(RefinableObj &) const | ObjCryst::RefinableObj | [virtual] |
RemovePar(RefinablePar *refPar) | ObjCryst::RefinableObj | |
RemoveRestraint(Restraint *pRestraint) | ObjCryst::RefinableObj | |
RemoveSubRefObj(RefinableObj &) | ObjCryst::RefinableObj | [protected] |
ResetParList() | ObjCryst::RefinableObj | |
RestoreParamSet(const unsigned long id) | ObjCryst::RefinableObj | |
SaveParamSet(const unsigned long id) const | ObjCryst::RefinableObj | |
Scatterer() | ObjCryst::Scatterer | |
Scatterer(const Scatterer &old) | ObjCryst::Scatterer | |
SetCrystal(Crystal &) | ObjCryst::Scatterer | |
SetDeleteRefParInDestructor(const bool b) | ObjCryst::RefinableObj | |
SetGlobalOptimStep(const RefParType *type, const REAL step) | ObjCryst::RefinableObj | |
SetLimitsAbsolute(const string &parName, const REAL min, const REAL max) | ObjCryst::RefinableObj | |
SetLimitsAbsolute(const RefParType *type, const REAL min, const REAL max) | ObjCryst::RefinableObj | |
SetLimitsProportional(const string &parName, const REAL min, const REAL max) | ObjCryst::RefinableObj | |
SetLimitsProportional(const RefParType *type, const REAL min, const REAL max) | ObjCryst::RefinableObj | |
SetLimitsRelative(const string &parName, const REAL min, const REAL max) | ObjCryst::RefinableObj | |
SetLimitsRelative(const RefParType *type, const REAL min, const REAL max) | ObjCryst::RefinableObj | |
SetName(const string &name) | ObjCryst::RefinableObj | [virtual] |
SetOccupancy(const REAL occupancy) | ObjCryst::Scatterer | [virtual] |
SetParIsFixed(const long parIndex, const bool fix) | ObjCryst::RefinableObj | |
SetParIsFixed(const string &parName, const bool fix) | ObjCryst::RefinableObj | |
SetParIsFixed(const RefParType *type, const bool fix) | ObjCryst::RefinableObj | |
SetParIsUsed(const string &parName, const bool use) | ObjCryst::RefinableObj | |
SetParIsUsed(const RefParType *type, const bool use) | ObjCryst::RefinableObj | |
SetX(const REAL x) | ObjCryst::Scatterer | [virtual] |
SetY(const REAL y) | ObjCryst::Scatterer | [virtual] |
SetZ(const REAL z) | ObjCryst::Scatterer | [virtual] |
TagNewBestConfig() const | ObjCryst::RefinableObj | [virtual] |
UnFixAllPar() | ObjCryst::RefinableObj | |
UpdateDisplay() const | ObjCryst::RefinableObj | [virtual] |
XMLInput(istream &is, const XMLCrystTag &tag) | ObjCryst::RefinableObj | [virtual] |
XMLOutput(ostream &os, int indent=0) const | ObjCryst::RefinableObj | [virtual] |
~RefinableObj() | ObjCryst::RefinableObj | [virtual] |
~Scatterer() | ObjCryst::Scatterer | [virtual] |