| AddOption(RefObjOpt *opt) | ObjCryst::RefinableObj | [protected] |
| AddPar(const RefinablePar &newRefPar) | ObjCryst::RefinableObj | |
| AddPar(RefinablePar *newRefPar) | ObjCryst::RefinableObj | |
| AddPar(RefinableObj &newRefParList) | ObjCryst::RefinableObj | |
| AddRestraint(Restraint *pNewRestraint) | ObjCryst::RefinableObj | |
| AddSubRefObj(RefinableObj &) | ObjCryst::RefinableObj | [protected] |
| BeginGlobalOptRandomMove() | ObjCryst::RefinableObj | |
| BeginOptimization(const bool allowApproximations=false, const bool enableRestraints=false) | ObjCryst::RefinableObj | [virtual] |
| ClearParamSet(const unsigned long id) const | ObjCryst::RefinableObj | |
| CreateParamSet(const string name="") const | ObjCryst::RefinableObj | |
| DeRegisterClient(RefinableObj &) const | ObjCryst::RefinableObj | [virtual] |
| EndOptimization() | ObjCryst::RefinableObj | [virtual] |
| EraseAllParamSet() | ObjCryst::RefinableObj | |
| FindPar(const string &name) const | ObjCryst::RefinableObj | [protected] |
| FindPar(const REAL *) const | ObjCryst::RefinableObj | [protected] |
| FindParamSet(unsigned long id) const | ObjCryst::RefinableObj | [protected] |
| FixAllPar() | ObjCryst::RefinableObj | |
| GetClassName() const | ObjCryst::Radiation | [virtual] |
| GetClockMaster() const | ObjCryst::RefinableObj | |
| GetClockRadiation() const | ObjCryst::Radiation | |
| GetClockWavelength() const | ObjCryst::Radiation | |
| GetGeneGroup(const RefinableObj &obj, CrystVector_uint &groupIndex, unsigned int &firstGroup) const | ObjCryst::RefinableObj | [virtual] |
| GetLinearPolarRate() const | ObjCryst::Radiation | |
| GetLogLikelihood() const | ObjCryst::RefinableObj | [virtual] |
| GetLSQCalc(const unsigned int) const | ObjCryst::RefinableObj | [virtual] |
| GetLSQDeriv(const unsigned int, RefinablePar &) | ObjCryst::RefinableObj | [virtual] |
| GetLSQObs(const unsigned int) const | ObjCryst::RefinableObj | [virtual] |
| GetLSQWeight(const unsigned int) const | ObjCryst::RefinableObj | [virtual] |
| GetName() const | ObjCryst::RefinableObj | [virtual] |
| GetNbLSQFunction() const | ObjCryst::RefinableObj | [virtual] |
| GetNbOption() const | ObjCryst::RefinableObj | |
| GetNbPar() const | ObjCryst::RefinableObj | |
| GetNbParNotFixed() const | ObjCryst::RefinableObj | |
| GetOption(const unsigned int i) | ObjCryst::RefinableObj | |
| GetOption(const unsigned int i) const | ObjCryst::RefinableObj | |
| GetPar(const long i) | ObjCryst::RefinableObj | |
| GetPar(const long i) const | ObjCryst::RefinableObj | |
| GetPar(const string &name) | ObjCryst::RefinableObj | |
| GetPar(const string &name) const | ObjCryst::RefinableObj | |
| GetPar(const REAL *) | ObjCryst::RefinableObj | |
| GetPar(const REAL *) const | ObjCryst::RefinableObj | |
| GetParamSet(const unsigned long setId) const | ObjCryst::RefinableObj | |
| GetParamSet(const unsigned long setId) | ObjCryst::RefinableObj | |
| GetParamSet_ParNotFixedHumanValue(const unsigned long setId, const long parNumber) const | ObjCryst::RefinableObj | |
| GetParamSetName(const unsigned long setId) const | ObjCryst::RefinableObj | |
| GetParNotFixed(const long i) | ObjCryst::RefinableObj | |
| GetParNotFixed(const long i) const | ObjCryst::RefinableObj | |
| GetRadiationType() const | ObjCryst::Radiation | |
| GetRefParListClock() const | ObjCryst::RefinableObj | |
| GetRestraintCost() const | ObjCryst::RefinableObj | [virtual] |
| GetSubObjRegistry() | ObjCryst::RefinableObj | |
| GetSubObjRegistry() const | ObjCryst::RefinableObj | |
| GetWavelength() const | ObjCryst::Radiation | |
| GetWavelengthType() const | ObjCryst::Radiation | |
| GetXRayTubeAlpha2Alpha1Ratio() const | ObjCryst::Radiation | |
| GetXRayTubeDeltaLambda() const | ObjCryst::Radiation | |
| GlobalOptRandomMove(const REAL mutationAmplitude, const RefParType *type=gpRefParTypeObjCryst) | ObjCryst::RefinableObj | [virtual] |
| InitOptions() | ObjCryst::Radiation | [private] |
| IsBeingRefined() const | ObjCryst::RefinableObj | |
| mClientObjRegistry | ObjCryst::RefinableObj | [mutable, protected] |
| mClockMaster | ObjCryst::RefinableObj | [protected] |
| mClockRadiation | ObjCryst::Radiation | [private] |
| mClockWavelength | ObjCryst::Radiation | [private] |
| mDeleteRefParInDestructor | ObjCryst::RefinableObj | [protected] |
| mIsbeingRefined | ObjCryst::RefinableObj | [protected] |
| mLinearPolarRate | ObjCryst::Radiation | [private] |
| mLSQDeriv | ObjCryst::RefinableObj | [mutable, protected] |
| mName | ObjCryst::RefinableObj | [protected] |
| mNbRefParNotFixed | ObjCryst::RefinableObj | [mutable, protected] |
| mOptionRegistry | ObjCryst::RefinableObj | [protected] |
| mRadiationType | ObjCryst::Radiation | [private] |
| mRandomMoveIsDone | ObjCryst::RefinableObj | [protected] |
| mRefParListClock | ObjCryst::RefinableObj | [protected] |
| mRefparNotFixedIndex | ObjCryst::RefinableObj | [mutable, protected] |
| mSubObjRegistry | ObjCryst::RefinableObj | [protected] |
| mvpRefPar | ObjCryst::RefinableObj | [protected] |
| mvpRestraint | ObjCryst::RefinableObj | [protected] |
| mvpSavedValuesSet | ObjCryst::RefinableObj | [mutable, protected] |
| mWavelength | ObjCryst::Radiation | [private] |
| mWavelengthType | ObjCryst::Radiation | [private] |
| mXRayTubeAlpha2Alpha1Ratio | ObjCryst::Radiation | [private] |
| mXRayTubeDeltaLambda | ObjCryst::Radiation | [private] |
| mXRayTubeName | ObjCryst::Radiation | [private] |
| operator=(const Radiation &) | ObjCryst::Radiation | |
| ObjCryst::RefinableObj::operator=(const RefinableObj &old) | ObjCryst::RefinableObj | |
| Prepare() | ObjCryst::RefinableObj | [protected, virtual] |
| PrepareForRefinement() const | ObjCryst::RefinableObj | |
| Print() const | ObjCryst::Radiation | [virtual] |
| Radiation() | ObjCryst::Radiation | |
| Radiation(const RadiationType rad, const REAL wavelength) | ObjCryst::Radiation | |
| Radiation(const string &XRayTubeElementName, const REAL alpha2Alpha2ratio=0.5) | ObjCryst::Radiation | |
| Radiation(const Radiation &) | ObjCryst::Radiation | |
| RandomizeConfiguration() | ObjCryst::RefinableObj | [virtual] |
| RefinableObj() | ObjCryst::RefinableObj | |
| RefinableObj(const bool internalUseOnly) | ObjCryst::RefinableObj | |
| RefinableObj(const RefinableObj &old) | ObjCryst::RefinableObj | |
| RegisterClient(RefinableObj &) const | ObjCryst::RefinableObj | [virtual] |
| RemovePar(RefinablePar *refPar) | ObjCryst::RefinableObj | |
| RemoveRestraint(Restraint *pRestraint) | ObjCryst::RefinableObj | |
| RemoveSubRefObj(RefinableObj &) | ObjCryst::RefinableObj | [protected] |
| ResetParList() | ObjCryst::RefinableObj | |
| RestoreParamSet(const unsigned long id) | ObjCryst::RefinableObj | |
| SaveParamSet(const unsigned long id) const | ObjCryst::RefinableObj | |
| SetDeleteRefParInDestructor(const bool b) | ObjCryst::RefinableObj | |
| SetGlobalOptimStep(const RefParType *type, const REAL step) | ObjCryst::RefinableObj | |
| SetLimitsAbsolute(const string &parName, const REAL min, const REAL max) | ObjCryst::RefinableObj | |
| SetLimitsAbsolute(const RefParType *type, const REAL min, const REAL max) | ObjCryst::RefinableObj | |
| SetLimitsProportional(const string &parName, const REAL min, const REAL max) | ObjCryst::RefinableObj | |
| SetLimitsProportional(const RefParType *type, const REAL min, const REAL max) | ObjCryst::RefinableObj | |
| SetLimitsRelative(const string &parName, const REAL min, const REAL max) | ObjCryst::RefinableObj | |
| SetLimitsRelative(const RefParType *type, const REAL min, const REAL max) | ObjCryst::RefinableObj | |
| SetLinearPolarRate(const REAL f) | ObjCryst::Radiation | |
| SetName(const string &name) | ObjCryst::RefinableObj | [virtual] |
| SetParIsFixed(const long parIndex, const bool fix) | ObjCryst::RefinableObj | |
| SetParIsFixed(const string &parName, const bool fix) | ObjCryst::RefinableObj | |
| SetParIsFixed(const RefParType *type, const bool fix) | ObjCryst::RefinableObj | |
| SetParIsUsed(const string &parName, const bool use) | ObjCryst::RefinableObj | |
| SetParIsUsed(const RefParType *type, const bool use) | ObjCryst::RefinableObj | |
| SetRadiationType(const RadiationType) | ObjCryst::Radiation | |
| SetWavelength(const REAL) | ObjCryst::Radiation | |
| SetWavelength(const string &XRayTubeElementName, const REAL alpha2Alpha2ratio=0.5) | ObjCryst::Radiation | |
| SetWavelengthType(const WavelengthType &type) | ObjCryst::Radiation | |
| TagNewBestConfig() const | ObjCryst::RefinableObj | [virtual] |
| UnFixAllPar() | ObjCryst::RefinableObj | |
| UpdateDisplay() const | ObjCryst::RefinableObj | [virtual] |
| XMLInput(istream &is, const XMLCrystTag &tag) | ObjCryst::Radiation | [virtual] |
| XMLOutput(ostream &os, int indent=0) const | ObjCryst::Radiation | [virtual] |
| ~Radiation() | ObjCryst::Radiation | |
| ~RefinableObj() | ObjCryst::RefinableObj | [virtual] |
